PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009614876.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 598aa    MW: 64951.9 Da    PI: 6.1507
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009614876.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-30334392259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  XP_009614876.1 334 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGTHNHP 392
                     7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-33318394IPR003657WRKY domain
SuperFamilySSF1182908.37E-28326394IPR003657WRKY domain
PROSITE profilePS5081129.677328394IPR003657WRKY domain
SMARTSM007741.5E-36333393IPR003657WRKY domain
PfamPF031068.2E-27335392IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MANGSGLSFD PDPIKHFLPF LEPKKLFKFQ PLLTSMESSP YKNRSPPSTI QFPVNLNCSN  60
TDHNQEEEEG QKIRPVIDEM DFFADHKKDG SNSEEAATTA NNTTMDTERK ESNTPPPELD  120
FNINTGLHLL TANTYSDQSI VEDGLSPNSE DKRTKNELAV LQAELERMNG ENRRLKDMLN  180
QATNDYSNLH MQMMTMIQQQ QHQENDQRDG KSDEVRQQIQ SKNGLGGGGQ IVPRQFMDLG  240
LAAATGSEVE ETSLSSSEGR SGRDKSRSPT NNMESGSTCG IGREDSPEKG SPGWGPNKIP  300
RLGNGSKTTD QATEATMRKA RVSVRARSEA PMITDGCQWR KYGQKMAKGN PCPRAYYRCT  360
MAAGCPVRKQ VQRCAEDRTI LITTYEGTHN HPLPPAAMAM ASTTSSAARM LLSGSMPSAD  420
GLMNSNFFAR TLLPCSSSMA TISASAPFPT VTLDLTQSPN PLQFPRSPNQ FQVPFSNPPH  480
NMLSNPAAAL LPQIFNQALY NQSKFSGLQL SQDSEGQNAS TLPSSIHQSN HNPLADTVNA  540
LTADPNFTAA LAAAITSLIG NPQQPNNGST NNTTAITTTA NNQNSSVTNG NNTSNGNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22320396176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7368000.0KF736800.1 Capsicum annuum WRKY6 (WRKY6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614876.10.0PREDICTED: probable WRKY transcription factor 31
RefseqXP_016507284.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9C5191e-140WRKY6_ARATH; WRKY transcription factor 6
TrEMBLV9XQY30.0V9XQY3_CAPAN; WRKY6
STRINGPGSC0003DMT4000388520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-120WRKY family protein